Shivom
  • Documentation and Guides
  • Getting Started
    • Sign Up
    • Uploading Your Data
    • Wallet
    • Search Data
    • Run Your Analysis
  • Pipelines
    • GWAS Pipeline
    • PheWAS Pipeline
    • PRS Pipeline
    • MetaGWAS Pipeline
    • Colocalization Pipeline
    • Medelian Randomization
    • Genetic Correlation
  • COVID-19
    • Data Preparation
    • SARS-CoV-2: Assembler
    • SARS-CoV-2: Alignment
    • Variant Caller: Sarek
    • Metagenomics Classifier: Kraken
  • FAQ
Powered by GitBook
On this page

Was this helpful?

Pipelines

A step-to-step guide to introduce your journey with the pipelines.

Shivom's analytical platform hosts a variety of genomic-based pipelines; from raw assembly and variant calling, to statistical association based analysis for population-based studies.

User Journey

A few simple steps are needed to run these pipelines:

  1. search the dataset using a therapeutic tag of interest in the search dataset page;

  2. specify the characteristics of your cohort (age, ethnicity, gender, lifestyle etc);

  3. select the pipeline card of interest;

  4. choose the parameters from the configuration page;

  5. provide the job name and run the analysis;

Then, you will be redirected to the results page.

PreviousRun Your AnalysisNextGWAS Pipeline

Last updated 4 years ago

Was this helpful?